Peeking at the Pathfinding Strategies of the Hippocampus | Nutrition Fit



Summary: Researchers observed hippocampal place cell changes in animal experiments of cue-poor and cue-rich spatial environments. The findings have implications for the treatment of brain disorders and the development of new AI technologies.

Source: KIST

We find routes to destination and remember special places because there is an area somewhere in the brain that functions like a GPS and navigation system. When taking a new path for the first time, we pay attention to the landmarks along the way. Owing to such navigation system, it becomes easier to find destinations along the path after having already used the path.

Over the years, scientists have learned, based on a variety of animal experiments, that cells in the brain region called hippocampus are responsible for spatial perception and are activated in discrete positions of the environment, which which reason they are called “place cells”. However, how place cells store long-term memories of locations and encode particular positions in the environment is still not understood.

The Korea Institute of Science and Technology (KIST) announced that the research team led by Sebastien Royer at KIST Brain Science Institute (BSI), in collaboration with a research team at New York University (NYU), uncovered that place cells in the hippocampus encode spatial information using interchangeably two distinct information processing mechanisms referred to as a rate code and a phase code, somewhat analogue to the number and spatial arrangement of bars in bar codes.

In addition, the research team found that parallel neural circuits and information processing mechanisms are used depending on the complexity of the landmarks along the path.

The KIST and NYU research teams identified fundamental principles of information processing in the hippocampus by conducting two types of spatial exploration experiments. In the first type of experiment, the researchers used a treadmill with a long belt, a well controlled spatial environment for mice, and trained the animals to run on the belt sequentially through a section cleared of any objects and another section furnished with small objects.

The second type of experiment was carried with rats foraging in a circular arena that was either completely empty or filled with objects. To analyze neural activity, they implanted silicon probe electrodes in CA1, the subregion generating the main output of the hippocampus, and in CA3, a subregion of the hippocampus suspected of playing an important role in spatial memory formation.

Results of the two experiments were consistent. It was found that the hippocampus uses different neural circuits and information processing strategies depending on the environmental conditions. In the object-free environments, a group of cells located in the superficial region of CA1 tends to be active and uses a rate code since the animal position is best predicted by changes in the frequency of action potentials discharged by single neurons.

In contrast, in a complex, object-strewn environment, a group of cells in the deep region of CA1 tend to be active and uses a phase code since the animal position is best predicted by the timing of a neuron action potentials relative to the ensemble of active neurons.

These findings suggest that the circuit using the rate code is more strongly associated with providing information about overall positioning and spatial perception, whereas the circuit using the phase code is more strongly associated with remembering the precise location of an object and spatial relationships. Aside from this, the respective contribution of inputs from CA3 and the entorhinal cortex was also analysed.

It is known that CA1 receive information from both the CA3 region and the entorhinal cortex. In this study, based on differences in fast network oscillations called “gamma”, it was found that superficial CA1 cells receive information primarily from CA3 in the simple environments whereas deep CA1 cells receive information primarily from the entorhinal cortex in the complex environments.

This shows a diagram from the study
Treadmill experiments to determine the rate and phase code of CA1. Credit: KIST

Sebastien Royer, Principal investigator at KIST said “this study improves our understanding on how the hippocampus processes information, which is a critical step for understanding the general mechanisms of memory.” He added that “such basic level understanding will eventually help the development of technologies for the diagnosis and treatment of brain disorders related to hippocampal injury such as Alzheimer’s type dementia, amnesia, and cognitive impairment, and might inspire the development of some AI.”

The research team headed by Sebastien Royer, PhD has been gradually expanding the understanding of information storage and processing in memory-related brain areas using diverse approaches. In a study combining mouse experiment and neural network modeling published last year in the journal “Nature Communications”, the same team identified the process by which granule cells in the dentate gyrus region of the hippocampus develop a uniform mapping of the space during spatial learning.

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About this hippocampus research news

Source: KIST
Contact: Do-Hyun Kim – KIST
Image: The image is credited to KIST

Original Research: Closed access.
Subcircuits of Deep and Superficial CA1 Place Cells Support Efficient Spatial Coding across Heterogeneous Environments” by Sebastien Royer et al. Neuron


Subcircuits of Deep and Superficial CA1 Place Cells Support Efficient Spatial Coding across Heterogeneous Environments

Table of Contents


  • Deep and superficial CA1 place cells were differentially expressed across environments
  • Cue-poor environments were represented by CA1 superficial place cells using a rate code
  • Cue-rich environments were represented by CA1 deep place cells using a phase code
  • Switching between spatial codes was mediated by gamma inputs and local inhibition


The hippocampus is thought to guide navigation by forming a cognitive map of space. Different environments differ in geometry and the availability of cues that can be used for navigation. Although several spatial coding mechanisms are known to coexist in the hippocampus, how they are influenced by various environmental features is not well understood. To address this issue, we examined the spatial coding characteristics of hippocampal neurons in mice and rats navigating in different environments. We found that CA1 place cells located in the superficial sublayer were more active in cue-poor environments and preferentially used a firing rate code driven by intra-hippocampal inputs. In contrast, place cells located in the deep sublayer were more active in cue-rich environments and used a phase code driven by entorhinal inputs. Switching between these two spatial coding modes was supported by the interaction between excitatory gamma inputs and local inhibition.


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